Smith et a I.: A comparison of three genetic methods for stock discrimination of Hoplostethus atlanticus 
81 1 
Appendix Table 3 
Random amplified polymorphic DNA(RAPD) fragment frequencies, calculated by assuming a biallelic system in Hardy -Weinberg 
equilibrium, in four populations of orange roughy. 
Locus 
Allele 
(n=no. of 
fish) 
Ritchie 
Box 
Waitaki 
Puysegur 
Locus 
Allele 
(n=no. of 
fish) 
Ritchie 
Box 
Waitaki 
Puysegur 
A14-1 
1 
0.00 
0.021 
0.00 
0.021 
D15-2 
1 
0.426 
0.542 
0.500 
0.489 
2 
1.00 
0.979 
1.00 
0.979 
2 
0.574 
0.458 
0.500 
0.500 
n 
44 
48 
42 
40 
n 
44 
48 
42 
40 
A14-2 
i 
0.454 
0.417 
0.417 
0.330 
D15-3 
i 
0.629 
0.708 
0.583 
0.745 
2 
0.546 
0.583 
0.583 
0.670 
2 
0.361 
0.292 
0.417 
0.255 
n 
44 
48 
42 
40 
n 
44 
48 
42 
40 
A14-3 
i 
0.306 
0.188 
0.167 
0.394 
D15-4 
i 
0.083 
0.063 
0.042 
0.043 
2 
0.694 
0.813 
0.833 
0.596 
2 
0.907 
0.938 
0.958 
0.957 
n 
44 
48 
42 
40 
n 
44 
48 
42 
40 
A15-1 
i 
0.009 
0.00 
0.00 
0.00 
E19-1 
i 
0.269 
0.292 
0.142 
0.330 
2 
0.991 
1.00 
1.00 
1.00 
2 
0.731 
0.708 
0.858 
0.670 
n 
44 
48 
42 
40 
n 
43 
48 
42 
38 
A15-2 
i 
0.806 
0.792 
0.708 
0.638 
E19-2 
i 
0.148 
0.271 
0.042 
0.149 
2 
0.194 
0.208 
0.292 
0.362 
2 
0.852 
0.729 
0.958 
0.851 
n 
44 
48 
42 
40 
n 
43 
48 
42 
38 
A15-3 
i 
0.028 
0.042 
0.042 
0.00 
E19-3 
i 
0.639 
0.646 
0.125 
0.521 
2 
0.972 
0.958 
0.958 
1.00 
2 
0.361 
0.354 
0.875 
0.479 
n 
44 
48 
42 
40 
n 
43 
48 
42 
38 
A15-4 
i 
0.009 
0.021 
0.00 
0.00 
E19-4 
i 
0.093 
0.021 
0.083 
0.021 
2 
0.991 
0.979 
1.00 
1.00 
2 
0.898 
0.979 
0.917 
0.979 
n 
44 
48 
42 
40 
n 
43 
48 
42 
38 
A16-1 
i 
0.49 
0.46 
0.33 
0.74 
E19-5 
i 
0.056 
0.042 
0.00 
0.021 
2 
0.51 
0.54 
0.67 
0.26 
2 
0.944 
0.958 
1.00 
0.979 
n 
43 
48 
42 
38 
n 
43 
48 
42 
38 
A16-2 
i 
0.019 
0.00 
0.00 
0.021 
E19-6 
i 
0.769 
0.708 
0.708 
0.745 
2 
0.981 
1.00 
1.00 
0.979 
2 
0.231 
0.292 
0.292 
0.255 
n 
43 
48 
42 
38 
n 
43 
48 
42 
38 
A16-3 
i 
0.278 
0.271 
0.125 
0.149 
H17-1 
i 
0.046 
0.00 
0.00 
0.021 
2 
0.722 
0.729 
0.875 
0.851 
2 
0.954 
1.00 
1.00 
0.979 
n 
43 
48 
42 
38 
n 
44 
48 
42 
38 
A16-4 
i 
0.694 
0.708 
0.583 
0.564 
H17-2 
i 
0.806 
0.708 
0.708 
0.713 
2 
0.306 
0.292 
0.417 
0.436 
2 
0.194 
0.292 
0.292 
0.287 
n 
43 
48 
42 
38 
n 
44 
48 
42 
38 
A16-5 
i 
0.019 
0.021 
0.00 
0.021 
H17-3 
i 
0.769 
0.792 
0.708 
0.745 
2 
0.981 
0.979 
1.00 
0.979 
2 
0.231 
0.208 
0.292 
0.255 
n 
43 
48 
42 
38 
n 
44 
48 
42 
38 
A17-1 
i 
0.009 
0.021 
0.00 
0.00 
H17-4 
i 
0.731 
0.708 
0.708 
0.638 
2 
0.991 
0.979 
1.00 
1.00 
2 
0.269 
0.292 
0.292 
0.362 
n 
43 
48 
42 
38 
n 
44 
48 
42 
38 
A17-3 
i 
0.009 
0.00 
0.00 
0.053 
H17-5 
i 
0.019 
0.021 
0.042 
0.021 
2 
0.991 
1.00 
1.00 
0.947 
2 
0.981 
0.979 
0.958 
0.979 
n 
43 
48 
42 
38 
n 
44 
48 
42 
38 
D15-1 
i 
0.111 
0.188 
0.042 
0.074 
2 
0.889 
0.813 
0.958 
0.926 
n 
44 
48 
42 
40 
