Metabarcoding of environmental samples suggest wide distribution of eelgrass (Zostera marina) pathogens in the north Pacific

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Pages
Table of Contents

The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data
Vol 5, Page 1, Date 2021-11-3
Plankton biodiversity and species co-occurrence based on environmental DNA – a multiple marker study
Vol 5, Page 1, Date 2021-11-3
Phytool, a ShinyApp to homogenise taxonomy of freshwater microalgae from DNA barcodes and microscopic observations
Vol 5, Page 1, Date 2021-12-15
Revision and annotation of DNA barcode records for marine invertebrates: report of the 8th iBOL conference hackathon
Vol 5, Page 1, Date 2021-12-16
Using DNA metabarcoding to decipher the diet plant component of mammals from the Eastern Mediterranean region
Vol 5, Page 1, Date 2021-12-20
Comparing species detection success between molecular markers in DNA metabarcoding of coastal macroinvertebrates
Vol 5, Page 1, Date 2021-12-29
Towards harmonization of DNA metabarcoding for monitoring marine macrobenthos: the effect of technical replicates and pooled DNA extractions on species detection
Vol 5, Page 1, Date 2021-12-29
Challenges in Curating Interdisciplinary Data in the Biodiversity Research Community
Vol 5, Page 1, Date 2021-12-8
Translating TDWG Controlled Vocabularies
Vol 5, Page 1, Date 2021-12-8
Application of propylene glycol in DNA-based studies of invertebrates
Vol 5, Page 1, Date 2021-1-4
First report of Cooka incisa (Beekey, 1937) from Europe (Diptera, Scatopsidae)
Vol 5, Page 1, Date 2021-2-10
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life
Vol 5, Page 1, Date 2021-2-26
Effects of Malaise trap spacing on species richness and composition of terrestrial arthropod bulk samples
Vol 5, Page 1, Date 2021-4-9
Metabarcoding of environmental samples suggest wide distribution of eelgrass (Zostera marina) pathogens in the north Pacific
Vol 5, Page 1, Date 2021-4-9
Potential for cross-contamination of diatom DNA samples when using toothbrushes
Vol 5, Page 1, Date 2021-5-17
Beyond fish eDNA metabarcoding: Field replicates disproportionately improve the detection of stream associated vertebrate species
Vol 5, Page 1, Date 2021-7-13
Wet grinding of invertebrate bulk samples – a scalable and cost-efficient protocol for metabarcoding and metagenomics
Vol 5, Page 1, Date 2021-7-20
Evaluating the performance of DNA metabarcoding for assessment of zooplankton communities in Western Lake Superior using multiple markers
Vol 5, Page 1, Date 2021-7-21
The power of metabarcoding: Can we improve bioassessment and biodiversity surveys of stream macroinvertebrate communities?
Vol 5, Page 1, Date 2021-7-28
How can integrated morphotaxonomy- and metabarcoding-based diatom assemblage analyses best contribute to the ecological assessment of streams?
Vol 5, Page 1, Date 2021-8-25
Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data
Vol 5, Page 1, Date 2021-8-30
AI-based Identification of Plant Photographs from Herbarium Specimens
Vol 5, Page 1, Date 2021-8-31
Biodiversity Knowledge Graphs: Time to move up a gear!
Vol 5, Page 1, Date 2021-8-31
Camtrap DP: A frictionless data exchange format for camera trapping data
Vol 5, Page 1, Date 2021-8-31
Cultivating Resilience in the Biodiversity Heritage Library During the Global Pandemic: Improving access to existing content
Vol 5, Page 1, Date 2021-8-31
Describing Living Collections and Specimens
Vol 5, Page 1, Date 2021-8-31
Fun and Easy Georeferencing with a New Online Tool from South Africa
Vol 5, Page 1, Date 2021-8-31
Highlights and Outcomes of the 2021 Global Community Consultation
Vol 5, Page 1, Date 2021-8-31
Is Your Collection Ambiguous?
Vol 5, Page 1, Date 2021-8-31
Taxonomy Compilation & Curation Within R
Vol 5, Page 1, Date 2021-8-31
Zoonom: Gathering the concepts of zoological nomenclature in an electronic thesaurus
Vol 5, Page 1, Date 2021-8-31
Aligning Standards Communities: Sustainable Darwin Core MIxS Interoperability
Vol 5, Page 1, Date 2021-9-1
Knowledge Extraction from Specimen-Derived Data from GenBank to Enrich Biodiversity Information
Vol 5, Page 1, Date 2021-9-1
Knowledge Graphs
Vol 5, Page 1, Date 2021-9-1
The 8 Years of Existence of Xper3: State of the art and future developments of the platform
Vol 5, Page 1, Date 2021-9-10
Crowdsourcing Fungal Biodiversity: Approaches and standards used by an all-volunteer community science project
Vol 5, Page 1, Date 2021-9-10
An Image is Worth a Thousand Species: Scaling high-resolution plant biodiversity prediction to biome-level using citizen science data and remote sensing imagery
Vol 5, Page 1, Date 2021-9-10
Integrating Taxonomic Names and Concepts from Paper and Digital Sources for a New Flora of Alaska
Vol 5, Page 1, Date 2021-9-10
Semantic Search in Legacy Biodiversity Literature: Integrating data from different data infrastructures
Vol 5, Page 1, Date 2021-9-10
The Fungal Literature-based Occurrence Database in Southern West Siberia (Russia)
Vol 5, Page 1, Date 2021-9-10
Third-party Annotations: Linking PlutoF platform and the ELIXIR Contextual Data ClearingHouse for the reporting of source material annotation gaps and inaccuracies
Vol 5, Page 1, Date 2021-9-10
Towards Interlinked FAIR Biodiversity Knowledge: The BiCIKL perspective
Vol 5, Page 1, Date 2021-9-10
BioBlitz is More than a Bit of Fun
Vol 5, Page 1, Date 2021-9-13
Connecting West and Central African Herbaria Data: A new Living Atlases regional data platform
Vol 5, Page 1, Date 2021-9-13
Expert Group on Antarctic Biodiversity Informatics: Coordinating the state-of-the-art internationally for biodiversity informatics in Antarctica
Vol 5, Page 1, Date 2021-9-13
GRSciColl: Registry of Scientific Collections maintained by the community for the community
Vol 5, Page 1, Date 2021-9-13
Hacking Infrastructures Together: Towards better interoperability of infrastructures
Vol 5, Page 1, Date 2021-9-13
Having Your Cake and Eating It Too: JSON-LD as an RDF serialization format
Vol 5, Page 1, Date 2021-9-13
Implementing GBIF Pipelines in the Atlas of Living Australia: The first step towards alignment and further collaboration
Vol 5, Page 1, Date 2021-9-13
Mobilizing Animal Movement Data: API use and the Movebank platform
Vol 5, Page 1, Date 2021-9-13
A Nano(publication) Approach Towards Big Data in Biodiversity
Vol 5, Page 1, Date 2021-9-13
Research Infrastructure Contact Zones: A method to visualise and align the activities of major biodiversity informatics initiatives
Vol 5, Page 1, Date 2021-9-13
Unlocking Inventory Data Capture, Sharing and Reuse: The Humboldt Extension to Darwin Core
Vol 5, Page 1, Date 2021-9-13
Biodiversity Literature Repository: Building the customized FAIR repository by using custom metadata
Vol 5, Page 1, Date 2021-9-14
Classification of Biological Interactions: Challenges in the field and in analysis
Vol 5, Page 1, Date 2021-9-14
Data Standards for the Phenology of Plant Specimens
Vol 5, Page 1, Date 2021-9-14
Discovering Known Biodiversity: Digital accessible knowledge — Getting the community involved
Vol 5, Page 1, Date 2021-9-14
The Paleo Data Working Group: A model for developing and sustaining a community of practice
Vol 5, Page 1, Date 2021-9-14
Participative Decision Making and the Sharing of Benefits: Laws, ethics, and data protection for building extended global communities
Vol 5, Page 1, Date 2021-9-14
Practical Considerations for Implementing Species Distribution Essential Biodiversity Variables
Vol 5, Page 1, Date 2021-9-14
Robust Integration of Biodiversity Data by Process- and State-based Representation of Object Histories and Modular Application Architecture
Vol 5, Page 1, Date 2021-9-14
An Implementation Approach for the Humboldt Extension to Darwin Core
Vol 5, Page 1, Date 2021-9-16
APIs: A Common Interface for the Global Biodiversity Informatics Community
Vol 5, Page 1, Date 2021-9-16
Challenges, Solutions, and Workflows Developed for the Taxonomic Backbone of the World Flora Online.
Vol 5, Page 1, Date 2021-9-16
Cloud-based Software Platforms for Citizen Science: Implications and opportunities for biodiversity standards
Vol 5, Page 1, Date 2021-9-16
Digitizing Primary Data on Biodiversity to Protect Natural History Collections Against Catastrophic Events: The type material of dragonflies (Insecta: Odonata) from Museu Nacional of Brazil
Vol 5, Page 1, Date 2021-9-16
ELViS is in the Building: The European Loans and Visits System and first experiences with Transnational and Virtual Access
Vol 5, Page 1, Date 2021-9-16
Experiences from the Danish Fungal Atlas: Linking mushrooming, nature conservation and primary biodiversity research
Vol 5, Page 1, Date 2021-9-16
A Set of Simple Tools For Assembling, Annotating, Versioning and Publishing Taxonomies
Vol 5, Page 1, Date 2021-9-16
Building a Global Open Extensible Biodiversity Commons Network
Vol 5, Page 1, Date 2021-9-17
A Case Study of Publishing Internal APIs to External Users
Vol 5, Page 1, Date 2021-9-17
A Collective Effort to Update the Legume Checklist
Vol 5, Page 1, Date 2021-9-17
Matching Species Names Across Biodiversity Databases: Sources, tools, pitfalls and best practices for taxonomic harmonization
Vol 5, Page 1, Date 2021-9-17
Internal transcribed spacer primer evaluation for vascular plant metabarcoding
Vol 5, Page 1, Date 2021-9-2
Delivering Fit-for-Use Data: Quality control
Vol 5, Page 1, Date 2021-9-20
Does TDWG Need an API Design Guideline?
Vol 5, Page 1, Date 2021-9-20
HydroClim Data Portal: Cyberinfrastructure for providing high-resolution GIS modeled streamflow and water temperature data to researchers
Vol 5, Page 1, Date 2021-9-20
ITIS and the Global Taxonomic Backbone
Vol 5, Page 1, Date 2021-9-20
The Natural Science Collections Facility: Building community with South African museums and herbaria
Vol 5, Page 1, Date 2021-9-20
Nomenclature over 5 years in TaxonWorks: Approach, implementation, limitations and outcomes
Vol 5, Page 1, Date 2021-9-20
(Re)Discovering Known Biodiversity: Introduction
Vol 5, Page 1, Date 2021-9-20
The Reptile Database: Curating the biodiversity literature without funding
Vol 5, Page 1, Date 2021-9-20
The Verification of Ecological Citizen Science Data: Current approaches and future possibilities
Vol 5, Page 1, Date 2021-9-20
The Biodiversity of Ecological Interactions: Challenges for recording and documenting the Web of Life
Vol 5, Page 1, Date 2021-9-21
Linking and the Role of the Material Citation
Vol 5, Page 1, Date 2021-9-21
Tackling Data Quality Challenges in the Finnish Biodiversity Information Facility (FinBIF)
Vol 5, Page 1, Date 2021-9-21
TaxonWorks: Character state matrices and identification tools
Vol 5, Page 1, Date 2021-9-21
The BHL-Plazi Partnership: Getting data from the 1800s directly into 21st century, reused digital accessible knowledge
Vol 5, Page 1, Date 2021-9-23
Biodiversity 4.0: Standardizing biodiversity protocols for the private sector
Vol 5, Page 1, Date 2021-9-23
Biodiversity Heritage Library and Global Names: Successes, opportunities and the challenges for the future collaboration
Vol 5, Page 1, Date 2021-9-23
Biological Data Standards – A primer for data managers
Vol 5, Page 1, Date 2021-9-23
CitSci.org & PPSR Core: Sharing biodiversity observations across platforms
Vol 5, Page 1, Date 2021-9-23
Components of a Digital Specimen Architecture for Biological Collections
Vol 5, Page 1, Date 2021-9-23
Connecting Taxonomic Backbones using Global Names Tools
Vol 5, Page 1, Date 2021-9-23
Creating a National Biodiversity Database in Gabon and the Challenges of Mobilizing Natural History Data for Francophone Countries
Vol 5, Page 1, Date 2021-9-23
ecocomDP: A data design pattern and R package to facilitate FAIR biodiversity data for ecological synthesis
Vol 5, Page 1, Date 2021-9-23
Facing the Future Together: Anchoring informatics progress in community at NMNH
Vol 5, Page 1, Date 2021-9-23
GBIF Integration of Open Data
Vol 5, Page 1, Date 2021-9-23
Improving the Adoption and Evolution of Data Standards for Fossil Specimens
Vol 5, Page 1, Date 2021-9-23
LifeWebs: A (global) database of bipartite ecological interaction networks
Vol 5, Page 1, Date 2021-9-23
Machine Learning as a Service for DiSSCo’s Digital Specimen Architecture
Vol 5, Page 1, Date 2021-9-23
MIDS Level 1: Specification, conformance checklist, mapping template and instructions for use
Vol 5, Page 1, Date 2021-9-23
Modelling the Heterogeneity within Citizen Science Data for Biodiversity Research
Vol 5, Page 1, Date 2021-9-23
Plant-pollinator Vocabulary - a Contribution to Interaction Data Standardization
Vol 5, Page 1, Date 2021-9-23
South Africa's Initiative Towards an Integrated Biodiversity Data Portal
Vol 5, Page 1, Date 2021-9-23
Synospecies, an application to reflect changes in taxonomic names based on a triple store based on taxonomic data liberated from publication
Vol 5, Page 1, Date 2021-9-23
Wanted: Standards for FAIR taxonomic concept representations and relationships
Vol 5, Page 1, Date 2021-9-23
Architectural Pattern: Study of orchid architecture using tools to take quick measurements of virtual specimens
Vol 5, Page 1, Date 2021-9-27
Author-Driven Computable Data and Ontology Production for Taxonomists
Vol 5, Page 1, Date 2021-9-27
bddashboard: An infrastructure for biodiversity dashboards in R
Vol 5, Page 1, Date 2021-9-27
The Digital Extended Specimen will Enable New Science and Applications
Vol 5, Page 1, Date 2021-9-27
ecoBalade, Reconnecting People to Their Bioregion
Vol 5, Page 1, Date 2021-9-27
ecoTeka, Urban Forestry Data Management
Vol 5, Page 1, Date 2021-9-27
GBIF Data Processing and Validation
Vol 5, Page 1, Date 2021-9-27
GeoNature, Open-Source FAIR Biodiversity Data Management
Vol 5, Page 1, Date 2021-9-27
Internet of Samples: Progress report
Vol 5, Page 1, Date 2021-9-27
Open Forest Data: Digitalizing and building an online repository
Vol 5, Page 1, Date 2021-9-27
pyOpenSci: Open and reproducible research, powered by Python
Vol 5, Page 1, Date 2021-9-27
TreatmentBank: Plazi's strategies and its implementation to most efficiently liberate data from scholarly publications
Vol 5, Page 1, Date 2021-9-27
Challenges in Curating 2D Multimedia Data in the Application of Machine Learning in Biodiversity Image Analysis
Vol 5, Page 1, Date 2021-9-28
Authoritative Taxonomic Databases for Progress in Edible Insect and Host Plant Inventories
Vol 5, Page 1, Date 2021-9-29
Building the Digital Extended Specimen: A case study of invasive European frog-bit (Hydrocharis morsus-ranae L.)
Vol 5, Page 1, Date 2021-9-3
Customized e-floras: How to develop your own project on the Pl@ntNet platform
Vol 5, Page 1, Date 2021-9-3
A Data Standard for Dynamic Collection Descriptions
Vol 5, Page 1, Date 2021-9-3
DiSSCo e-Services to Serve Global Community Needs
Vol 5, Page 1, Date 2021-9-3
The DiSSCo Knowledgebase: A trusted information hub for the natural science collection community worldwide
Vol 5, Page 1, Date 2021-9-3
Linking Data and Descriptions on Moths Using the Wikimedia Ecosystem
Vol 5, Page 1, Date 2021-9-3
Robust Machine Learning Classification of Unlabeled Biological Data: A case study with herbaria sheets
Vol 5, Page 1, Date 2021-9-3
The South African National Plant Checklist: Maintaining the taxonomic backbone for a megadiverse country
Vol 5, Page 1, Date 2021-9-3
TaxoTracker: A collaborative platform for taxonomic resource maintenance
Vol 5, Page 1, Date 2021-9-3
Technical Considerations for a Transactional Model to Realize the Digital Extended Specimen
Vol 5, Page 1, Date 2021-9-3
Towards a COST MOBILISE Guideline for Long Term Preservation and Archiving of Data Constructs from Scientific Collections Facilities
Vol 5, Page 1, Date 2021-9-3
18S rRNA amplicon sequence data (V1–V3) of the Bronx river estuary, New York
Vol 5, Page 1, Date 2021-9-7
Announcing Big-Bee: An initiative to promote understanding of bees through image and trait digitization
Vol 5, Page 1, Date 2021-9-7
BHL and the Pandemic: An accelerator of digital advances and transformation
Vol 5, Page 1, Date 2021-9-7
Estimating the Completeness of Preserved Collections in Representing Global Biodiversity
Vol 5, Page 1, Date 2021-9-7
Extracting Data at Scale: Machine learning at the Natural History Museum
Vol 5, Page 1, Date 2021-9-7
Machine Learning for Species Identification: The HebelomaProject from database to website
Vol 5, Page 1, Date 2021-9-7
Reducing Manual Supervision Required for Biodiversity Monitoring with Self-Supervised Learning
Vol 5, Page 1, Date 2021-9-7
Species Detection and Segmentation of Multi-specimen Historical Herbaria
Vol 5, Page 1, Date 2021-9-7
Use of Target Species in Citizen Science Fungi Recording Schemes
Vol 5, Page 1, Date 2021-9-7
Workforce Capacity Development and the Digital Extended Specimen
Vol 5, Page 1, Date 2021-9-7
#RetroPIDs: The missing link to the foundation of biodiversity knowledge
Vol 5, Page 1, Date 2021-9-8
Algorithms for connecting scientific names with literature in the Biodiversity Heritage Library via the Global Names Project and Catalogue of Life
Vol 5, Page 1, Date 2021-9-8
Genomes on a Tree (GoaT): A centralized resource for eukaryotic genome sequencing initiatives
Vol 5, Page 1, Date 2021-9-8
Using the Taxonomic Backbone(s): The challenge of selecting a taxonomic resource and integrating it with a collection management solution
Vol 5, Page 1, Date 2021-9-8
Hypera temperei Hoffmann, 1958 – first discovery of the western alpine element in the Swiss Alps with biological details, and new morphological insights (Coleoptera, Curculionidae)
Vol 5, Page 5, Date 2021-3-9
Two males, one female: triplet-style mating behaviour in the Darwin wasp Xorides ater (Gravenhorst, 1829) (Hymenoptera, Ichneumonidae, Xoridinae) in the Swiss Alps
Vol 5, Page 15, Date 2021-5-21
First observation of an ant colony of Formica fuscocinerea Forel, 1874 invaded by the social parasite F. truncorum Fabricius, 1804 (Hymenoptera, Formicidae)
Vol 5, Page 23, Date 2021-6-2
A fungal parasite selects against body size but not fluctuating asymmetry in Swiss subalpine yellow dung flies
Vol 5, Page 27, Date 2021-6-11
Unraveling a complex problem: Dichrorampha velata sp. nov., a new species from the Alps hitherto confounded with D. alpestrana ([Zeller], 1843) sp. rev. = D. montanana (Duponchel, 1843) syn. nov. (Lepidoptera, Tortricidae)
Vol 5, Page 37, Date 2021-6-24
Rediscovery of Stactobia eatoniella McLachlan, 1880 (Trichoptera, Hydroptilidae) in Switzerland after more than seventy years
Vol 5, Page 55, Date 2021-7-7
Energetic underpinnings of yellow dung fly mating success in the field
Vol 5, Page 61, Date 2021-7-22
Mitrapsylla rupestris sp. nov., a psyllid (Hemiptera, Psylloidea) associated with Poiretia bahiana (Fabaceae) endemic to the Espinhaço mountain range (Brazil, Bahía)
Vol 5, Page 69, Date 2021-9-1
An updated checklist of the Cantharidae and Lycidae of Switzerland (Coleoptera, Elateroidea)
Vol 5, Page 77, Date 2021-9-1
Female accessory gland fluid promotes sperm survival in yellow dung flies
Vol 5, Page 95, Date 2021-9-10
Relict populations of Lyonetia ledi Wocke, 1859 (Lepidoptera, Lyonetiidae) from the Alps indicate postglacial host-plant shift to the famous Alpenrose (Rhododendron ferrugineum L.)
Vol 5, Page 101, Date 2021-11-22
On some Ctenarytaina species (Hemiptera, Psylloidea) from Gunung Kinabalu (Malaysia, Sabah)
Vol 5, Page 107, Date 2021-11-22
Bänziger H (2021) Vampire moths. Behaviour, ecology and taxonomy of blood-sucking Calyptra.
Vol 5, Page 115, Date 2021-11-22
In memoriam Professor Dr. Georg Benz (14. Juli 1926 – 15. Juni 2021)
Vol 5, Page 117, Date 2021-11-22
Protokoll der Jahresversammlung der Schweizerischen Entomologischen Gesellschaft vom 5. März und 21. Juni 2021 via Videokonferenz
Vol 5, Page 119, Date 2021-11-22
Five years of Alpine Entomology, the international journal on mountain insects
Vol 5, Page 123, Date 2021-11-22
A new cryptic species of the Pristimantis lacrimosus group (Anura, Strabomantidae) from the eastern slopes of the Ecuadorian Andes
Vol 5, Page 151, Date 2021-7-23

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Metabarcoding and metagenomics

Metabarcoding of environmental samples suggest wide distribution of eelgrass (Zostera marina) pathogens in the north Pacific

Menning, Damian M.
Gravley, Hunter A.
Cady, Melissa N.
Pepin, Daniel
Wyllie-Echeverria, Sandy
Ward, David H
Talbot, Sandra L.

Bulgaria Pensoft Publishers 2017-

2021-4-9

https://doi.org/10.3897/mbmg.5.62823

Pensoft Publishers

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